1. Jiapei Yuan#, *, Yang Tong#, Le Wang, Xiaoxiao Yang, Xiaochuan Liu, Meng Shu, Zekun Li, Wen Jin, Chenchen Guan, Yuting Wang, Qiang Zhang*, Yang Yang*. A compendium of genetic variations associated with promoter usage across 49 human tissues. Nature Communications. 2024 Oct 9;15(1):8758. (IF=15.7)
2. Jiapei Yuan#*, Jingliao Zhang#, Beibei Zhao, Fang Liu, Tianfeng Liu, Yongjuan Duan, Yumei Chen, Xiaojuan Chen, Yao Zou, Li Zhang, Ye Guo, Wenyu Yang, Yang Yang, Jun Wei*, Xiaofan Zhu*, Yingchi Zhang*. Single-cell transcriptomic analysis of the immune microenvironment in pediatric acute leukemia. Cancer Letters. 2024 Jun 4:217018. (IF=10.1)
3. Xiaochuan Liu#, Hao Chen#, Zekun Li, Xiaoxiao Yang, Wen Jin, Yuting Wang, Jian Zheng, Long Li, Chenghao Xuan, Jiapei Yuan*, Yang Yang*. InPACT: a computational method for accurate characterization of intronic polyadenylation from RNA sequencing data. Nature Communications. 2024 Mar 22;15(1):2583. (IF=15.7)
4. Zekun Li#, Gerui Liu#, XiaoXiao Yang#, Meng Shu, Wen Jin, Yang Tong, Xiaochuan Liu, Yuting Wang, Jiapei Yuan*, Yang Yang*. An atlas of cell-type-specific interactome networks across 44 human tumor types. Genome Medicine, 2024 Feb 12;16(1):30. (IF=11.2).
5. Jiapei Yuan#, Yang Tong#, Xiaochuan Liu, Mulin Jun Li, Qiang Zhang*, Yang Yang*. eaQTLdb: An atlas of enhancer activity quantitative trait loci across cancer types. International Journal of Cancer, 2023 Jul 1;153(1):111-119. (IF=5.7).
6. Jiapei Yuan, Kathleen E Houlahan, Susmita G Ramanand, Sora Lee, GuemHee Baek, Yang Yang, Yong Chen, Douglas W Strand, Michael Q Zhang, Paul C Boutros, Ram S Mani*. Prostate cancer transcriptomic regulation by the interplay of germline risk alleles, somatic mutations and 3D-genomic architecture. Cancer Discovery, 2022, Dec 2;12(12):2838-2855. (IF=29.1)
7. Susmita G Ramanand#, Yong Chen#, Jiapei Yuan#, Kelly Daescu, Maryou Bk Lambros, Kathleen E Houlahan, Suzanne Carreira, Wei Yuan, GuemHee Baek, Adam Sharp, Alec Paschalis, Mohammed Kanchwala, Yunpeng Gao, Adam Aslam, Nida Safdar, Xiaowei Zhan, Ganesh V Raj, Chao Xing, Paul C Boutros, Johann de Bono, Michael Q Zhang*, Ram S Mani*. The Landscape of RNA Polymerase II Associated Chromatin Interactions in Prostate Cancer. Journal of Clinical investigation, 2020 Aug 3;130(8):3987-4005. (IF=14.8)
8. Jiapei Yuan#, Jingrui Li#, Yang Yang, Chang Tan, Yumin Zhu, Long Hu, Yijun Qi*, Zhi John Lu*. Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa. The Plant Journal, 2018 Mar;93(5):814-827. (IF=5.726).
9. Jiapei Yuan#, Ye Zhang#, Jinsong Dong, Yuzhe Sun, Boon L Lim, Dong Liu*, Zhi John Lu*. Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana. BMC Genomics, 2016 Aug 18;17:655.
10. Chao Di#, Jiapei Yuan#, Yue Wu, Jingrui Li, Huixin Lin, Long Hu, Ting Zhang, Yijun Qi, Mark B Gerstein, Yan Guo, Zhi John Lu*. Characterization of stress-responsive lncRNA in Arabidopsis Thaliana by integrating expression, epigenetic and structural features. The Plant Journal, 2014 Dec;80(5):848-61. (ESI highly cited paper, in the top 1% of the academic field of Plant & Animal Science). (IF= IF=5.726).